Recent Changes

Wednesday, November 8

  1. page home edited ... Current release version: 3.31 [download] If you have a previous version, please update becaus…
    ...
    Current release version: 3.31 [download]
    If you have a previous version, please update because of bug fixes and new features.
    Warning: Mesquite does not work under Java 9 because of major new restrictions imposed by Oracle on the way Java applications can be structured. We are working on a fix for this. In the meantime, do not install Java 9 if you wish to use Mesquite.
    Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Because it is modular, the analyses available depend on the modules installed.
    {analysesMedley.jpg}
    (view changes)
    8:55 am

Sunday, October 1

  1. page History of New Features edited ... Bug Fixes and Workarounds Alignment using ClustalW was broken. Fixed in build 860. Matrices…
    ...
    Bug Fixes and Workarounds
    Alignment using ClustalW was broken. Fixed in build 860.
    Matrices formed using the Concatenate Selected Matrices feature sometimes omitted state names that were present in the original matrices. Fixed in build 861.
    Version 3.31
    New Features
    (view changes)
    10:32 pm

Thursday, September 21

  1. page History of New Features edited ... There is also a list of release dates. Features in the next release version of Mesquite; the …
    ...
    There is also a list of release dates.
    Features in the next release version of Mesquite; the latest source code in the development branch of the MesquiteProject/MesquiteCore repository on GitHub contains these changes
    Nothing yet!New Features
    Nothing yet.
    Bug Fixes and Workarounds
    Alignment using ClustalW was broken. Fixed in build 860.

    Version 3.31
    New Features
    (view changes)
    4:15 pm

Wednesday, September 20

  1. page How to Cite Mesquite edited ... The citation for this version of the Mesquite sofware is: Maddison, W. P. and D.R. Maddison. …
    ...
    The citation for this version of the Mesquite sofware is:
    Maddison, W. P. and D.R. Maddison. 2017. Mesquite: a modular system for
    ...
    analysis. Version 3.33.31 http://mesquiteproject.org
    (The version number listed above might not be up to date. Check the Mesquite Startup window or the Project and Files window when Mesquite is running to find the version you have.)
    If you are using an additional Mesquite package (e.g., PDAP, Zephyr, TreeSetViz,Hypha, Chromaseq) you may need to cite that as well; check the documentation of that package for citation information.
    ...
    version 3.5.
    Maddison, W. P. and D.R. Maddison. 2017. Mesquite: a modular system for
    ...
    analysis. Version 3.33.31 http://mesquiteproject.org.
    Za, T. 2014. SimSpeciation: a package of modules to simulate evolutionary
    trees. Version 3.14159.
    (view changes)
    9:17 am
  2. page Release Dates edited ... First Build Date 3.31 858 20 September 2017 3.3 854
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    First Build
    Date
    3.31
    858
    20 September 2017

    3.3
    854
    (view changes)
    9:16 am
  3. page home edited If you're looking for Mesquite Software, Inc. or its CSIM toolkit for building simulation models, g…
    If you're looking for Mesquite Software, Inc. or its CSIM toolkit for building simulation models, go here
    Mesquite: A modular system for evolutionary analysis
    ...
    release version: 3.33.31 [download]
    If you have a previous version, please update because of bug fixes and new features.
    Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Because it is modular, the analyses available depend on the modules installed.
    (view changes)
    9:15 am
  4. page History of New Features edited ... There is also a list of release dates. Features in the next release version of Mesquite; the …
    ...
    There is also a list of release dates.
    Features in the next release version of Mesquite; the latest source code in the development branch of the MesquiteProject/MesquiteCore repository on GitHub contains these changes
    Nothing yet!
    Version 3.31
    New Features
    There are a few minor enhancements to the Project panel and notifications to the user.

    Bug Fixes and Workarounds
    Alignment using external programs (e.g., MAFFT, MUSCLE) was not functioning for old (1.7 and before) versions of Java. Fixed.
    (view changes)
    9:15 am

Monday, September 18

  1. page History of New Features edited ... Bug Fixes and Workarounds Alignment using external programs (e.g., MAFFT, MUSCLE) was not fun…
    ...
    Bug Fixes and Workarounds
    Alignment using external programs (e.g., MAFFT, MUSCLE) was not functioning for old (1.7 and before) versions of Java. Fixed.
    Several small bugs fixed.
    Version 3.3
    New Features
    (view changes)
    5:52 pm

Sunday, September 17

  1. page History of New Features edited ... There is also a list of release dates. Features in the next release version of Mesquite; the …
    ...
    There is also a list of release dates.
    Features in the next release version of Mesquite; the latest source code in the development branch of the MesquiteProject/MesquiteCore repository on GitHub contains these changes
    Nothing yet.Bug Fixes and Workarounds
    Alignment using external programs (e.g., MAFFT, MUSCLE) was not functioning for old (1.7 and before) versions of Java. Fixed.

    Version 3.3
    New Features
    (view changes)
    8:58 am

Tuesday, September 12

  1. page How to Cite Mesquite edited ... The citation for this version of the Mesquite sofware is: Maddison, W. P. and D.R. Maddison. …
    ...
    The citation for this version of the Mesquite sofware is:
    Maddison, W. P. and D.R. Maddison. 2017. Mesquite: a modular system for
    ...
    analysis. Version 3.23.3 http://mesquiteproject.org
    (The version number listed above might not be up to date. Check the Mesquite Startup window or the Project and Files window when Mesquite is running to find the version you have.)
    If you are using an additional Mesquite package (e.g., PDAP, Zephyr, TreeSetViz,Hypha, Chromaseq) you may need to cite that as well; check the documentation of that package for citation information.
    ...
    version 3.5.
    Maddison, W. P. and D.R. Maddison. 2017. Mesquite: a modular system for
    ...
    analysis. Version 3.23.3 http://mesquiteproject.org.
    Za, T. 2014. SimSpeciation: a package of modules to simulate evolutionary
    trees. Version 3.14159.
    (view changes)
    3:31 pm

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