Recent Changes

Monday, March 6

  1. page History of New Features edited ... A bug was introduced in Mesquite 3.2 that changes how taxon names were simplified; in particul…
    ...
    A bug was introduced in Mesquite 3.2 that changes how taxon names were simplified; in particular, in various contexts in which underscores should have been used in taxon names, they were removed. This may cause various file incompatibilities, and would alter the behavior of Simplify Taxon Names. Fixed in Build 807.
    Drawing of coalescent trees contained within another tree was broken in version 3.1. Fixed in Build 809.
    Separated suppression of TITLE and LINKs commands from suppression of ID and BLOCKID commands for better compatibility with PAUP*. Build 811.
    Version 3.2
    New Features
    (view changes)
    5:18 pm
  2. page History of New Features edited ... NCBI changed how BLAST searches are conducted programmatically, and Mesquite's Matrix > Sea…
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    NCBI changed how BLAST searches are conducted programmatically, and Mesquite's Matrix > Search > Top BLAST Matches on the NCBI server failed as a result. Fixed in Build 803.
    A bug was introduced in Mesquite 3.2 that changes how taxon names were simplified; in particular, in various contexts in which underscores should have been used in taxon names, they were removed. This may cause various file incompatibilities, and would alter the behavior of Simplify Taxon Names. Fixed in Build 807.
    Drawing of coalescent trees contained within another tree was broken in version 3.1. Fixed in Build 809.
    Version 3.2
    New Features
    (view changes)
    12:59 pm

Sunday, February 12

  1. page History of New Features edited ... Bug Fixes and Workarounds NCBI changed how BLAST searches are conducted programmatically, and…
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    Bug Fixes and Workarounds
    NCBI changed how BLAST searches are conducted programmatically, and Mesquite's Matrix > Search > Top BLAST Matches on the NCBI server failed as a result. Fixed in Build 803.
    ...
    introduced in simplifyingMesquite 3.2 that changes how taxon names that wouldwere simplified; in particular, in various contexts in which underscores should have been used in taxon names, they were removed. This may cause various
    ...
    Taxon Names. Fixed in Build 807.
    Version 3.2
    New Features
    (view changes)
    12:19 pm
  2. page History of New Features edited ... Bug Fixes and Workarounds NCBI changed how BLAST searches are conducted programmatically, and…
    ...
    Bug Fixes and Workarounds
    NCBI changed how BLAST searches are conducted programmatically, and Mesquite's Matrix > Search > Top BLAST Matches on the NCBI server failed as a result. Fixed in Build 803.
    A bug was introduced in simplifying taxon names that would cause various file incompatibilities, and would alter the behavior of Simplify Taxon Names.
    Version 3.2
    New Features
    (view changes)
    12:15 pm

Saturday, January 28

  1. page History of New Features edited ... Features in the next release version of Mesquite; the latest source code in the development br…
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    Features in the next release version of Mesquite; the latest source code in the development branch of the MesquiteProject/MesquiteCore repository on GitHub contains these changes
    New Features
    ...
    be needed. Build 805.
    Bug Fixes and Workarounds
    NCBI changed how BLAST searches are conducted programmatically, and Mesquite's Matrix > Search > Top BLAST Matches on the NCBI server failed as a result. Fixed in Build 803.
    (view changes)
    12:10 pm

Thursday, January 26

  1. page History of New Features edited ... Features in the next release version of Mesquite; the latest source code in the development br…
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    Features in the next release version of Mesquite; the latest source code in the development branch of the MesquiteProject/MesquiteCore repository on GitHub contains these changes
    New Features
    ...
    given tree. This is available in all contexts for which a number for a tree would be needed.
    Bug Fixes and Workarounds
    NCBI changed how BLAST searches are conducted programmatically, and Mesquite's Matrix > Search > Top BLAST Matches on the NCBI server failed as a result. Fixed in Build 803.
    (view changes)
    9:51 pm
  2. page History of New Features edited ... Features in the next release version of Mesquite; the latest source code in the development br…
    ...
    Features in the next release version of Mesquite; the latest source code in the development branch of the MesquiteProject/MesquiteCore repository on GitHub contains these changes
    New Features
    Nothing yetMesquite can now calculate the number of SPR rearrangements for a given tree.
    Bug Fixes and Workarounds
    NCBI changed how BLAST searches are conducted programmatically, and Mesquite's Matrix > Search > Top BLAST Matches on the NCBI server failed as a result. Fixed in Build 803.
    (view changes)
    9:51 pm

Saturday, January 7

  1. page History of New Features edited ... Nothing yet Bug Fixes and Workarounds ... changed how GenBank is queried using BLAST, BL…
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    Nothing yet
    Bug Fixes and Workarounds
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    changed how GenBank is queried using BLAST,BLAST searches are conducted programmatically, and Mesquite's
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    NCBI server failed.failed as a result. Fixed in
    Version 3.2
    New Features
    (view changes)
    8:43 pm
  2. page History of New Features edited ... Nothing yet Bug Fixes and Workarounds ... NCBI server now fail. Not yet fixed. failed. F…
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    Nothing yet
    Bug Fixes and Workarounds
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    NCBI server now fail. Not yet fixed.failed. Fixed in Build 803.
    Version 3.2
    New Features
    (view changes)
    7:30 pm
  3. page History of New Features edited ... Nothing yet Bug Fixes and Workarounds Nothing NCBI changed how GenBank is queried using BL…
    ...
    Nothing yet
    Bug Fixes and Workarounds
    NothingNCBI changed how GenBank is queried using BLAST, and Mesquite's Matrix > Search > Top BLAST Matches on the NCBI server now fail. Not yet fixed.
    Version 3.2
    New Features
    (view changes)
    5:21 pm

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